| MirGeneDB ID | Cpo-Mir-185 |
|---|
| Family name |
MIR-185 (all species) |
|---|
| Seed |
GGAGAGA |
|---|
| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-185
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-185
Cfa-Mir-185
Cja-Mir-185
Dno-Mir-185
Eca-Mir-185
Ete-Mir-185
Hsa-Mir-185
Laf-Mir-185
Mml-Mir-185
Mmr-Mir-185
Mmu-Mir-185
Ocu-Mir-185
Pab-Mir-185
Rno-Mir-185
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_4: 19120765-19120820 [+]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGGCCUGGCUUGAGUGGGGGGUGAGGGACUGGAGAGAAAGGCAGUUCCUGAUGGUCCCUUCCCCAGGGGCUGGCUUUCCUCUGGUCCUUCCCUCCCAAUGACCACGUUUUCAUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGGCCUGGCUUGAGUG--| U UG A G AUGGUC
GGGGG GAGGGAC GAG GAAAG CAGUUCCUG \
CCCUC CUUCCUG CUC CUUUC GUCGGGGAC C
ACUACUUUUGCACCAGUAA^ C GU - G CCCUUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-185_5p |
| mirBase accession | MIMAT0047054 |
|---|
| Sequence |
0- UGGAGAGAAAGGCAGUUCCUGA -22
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-185_3p* |
| mirBase accession | MIMAT0047055 |
|---|
| Sequence |
35- AGGGGCUGGCUUUCCUCUGGU -56
Get sequence
|
|---|
