MirGeneDB ID | Eca-Mir-185 |
Family name |
MIR-185 (all species) |
Seed |
GGAGAGA |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-185
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Paralogues |
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Orthologues |
Bta-Mir-185
Cfa-Mir-185
Cja-Mir-185
Cpo-Mir-185
Dno-Mir-185
Ete-Mir-185
Hsa-Mir-185
Laf-Mir-185
Mml-Mir-185
Mmr-Mir-185
Mmu-Mir-185
Ocu-Mir-185
Pab-Mir-185
Rno-Mir-185
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Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009155.1: 326605-326660 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CGGGCCUGGCUCGAGUAGGGGGUGAGGGAUUGGAGAGAAAGGCAGUUCCUGAUGGUCCCCUCCCCAGGGGCUGGCUUUCCUCUGGUCCUUCCUUCCCAAUGACCGCGUCUUCGUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGGGCCUGGCUCGAGUA--| U UG A G AUGGUC
GGGGG GAGGGAU GAG GAAAG CAGUUCCUG \
CCCUU CUUCCUG CUC CUUUC GUCGGGGAC C
ACUGCUUCUGCGCCAGUAA^ C GU - G CCCUCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Mature sequence |
Eca-Mir-185_5p |
mirBase accession | None |
Sequence |
0- UGGAGAGAAAGGCAGUUCCUGA -22
Get sequence
|
Star sequence |
Eca-Mir-185_3p* |
mirBase accession | MIMAT0034461 |
Sequence |
35- AGGGGCUGGCUUUCCUCUGGU -56
Get sequence
|