Mir-185

MirGeneDB ID

Cfa-Mir-185

Family name

MIR-185 (all species)

Seed

GGAGAGA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-185

Paralogues

Orthologues

Bta-Mir-185 Cja-Mir-185 Cpo-Mir-185 Dno-Mir-185 Eca-Mir-185 Ete-Mir-185 Hsa-Mir-185 Laf-Mir-185 Mml-Mir-185 Mmr-Mir-185 Mmu-Mir-185 Ocu-Mir-185 Pab-Mir-185 Rno-Mir-185

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr26: 29296014-29296069 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-185)

Mir-1306 chr26: 29255668-29255728 [-] UCSC Ensembl
Mir-185 chr26: 29296014-29296069 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGGCCUGGCUUGAGUGGGGGGUGAGGGAUUGGAGAGAAAGGCAGUUCCUGAUGGUCCCCUCCCCAGGGGCUGGCUUUCCUCUGGUCCUUCCCUCCCAAUGACCACGUCUUCAUCG

Get precursor sequence

Structure

        10          20        30        40        50        
CGGGCCUGGCUUGAGUG--|    U       UG   A     G         AUGGUC 
                   GGGGG GAGGGAU  GAG GAAAG CAGUUCCUG      \
                   CCCUC CUUCCUG  CUC CUUUC GUCGGGGAC      C
GCUACUUCUGCACCAGUAA^    C       GU   -     G         CCCUCC 
    110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

In dog the highest read count for the Dicer cut for the 3p arm is shifted +1 but the corresponding 5p arm reads are only about ~50% of the read annotated here.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-185_5p

mirBase accession

MIMAT0006660

Sequence

0- UGGAGAGAAAGGCAGUUCCUGA -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-185
miRDB: MIMAT0006660

Star sequence

Cfa-Mir-185_3p*

mirBase accession

None

Sequence

35- AGGGGCUGGCUUUCCUCUGGU -56

Get sequence