MirGeneDB ID | Ete-Mir-185 |
Family name |
MIR-185 (all species) |
Seed |
GGAGAGA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-185
Cfa-Mir-185
Cja-Mir-185
Cpo-Mir-185
Dno-Mir-185
Eca-Mir-185
Hsa-Mir-185
Laf-Mir-185
Mml-Mir-185
Mmr-Mir-185
Mmu-Mir-185
Ocu-Mir-185
Pab-Mir-185
Rno-Mir-185
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980301: 71891276-71891331 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CAGGCCUGGCUUGAGUGGGGGGUGAGGGGCUGGAGAGAAAGGCAGUCCCUGAUGGUCCCCUCCCCAGGGGCUGGUUUUCCUCUGGUCCUUCCUUCCCAAUGACCGCGUCUUUGUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGCCUGGCUUGAGUG--| U UG A G AUGGUC
GGGGG GAGGGGC GAG GAAAG CAGUCCCUG \
CCCUU CUUCCUG CUC CUUUU GUCGGGGAC C
ACUGUUUCUGCGCCAGUAA^ C GU - G CCCUCC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-185_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGAGAGAAAGGCAGUCCCUGA -22
Get sequence
|
Star sequence |
Ete-Mir-185_3p* (predicted) |
mirBase accession | None |
Sequence |
35- AGGGGCUGGUUUUCCUCUGGU -56
Get sequence
|