MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-185

Family name MIR-185 (all species)
Seed GGAGAGA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-185
Paralogues
Orthologues Bta-Mir-185  Cfa-Mir-185  Cpo-Mir-185  Dno-Mir-185  Ete-Mir-185  Hsa-Mir-185  Mml-Mir-185  Mmu-Mir-185  Rno-Mir-185 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0128: 681999-682054 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGCCUGGCUCGACUGGGGGGCGAGGGAUUGGAGAGAAAGGCAGUUCCUGAUGUUCCCCUCCCCAGGGGCUGGCUUUCCUCUGGUUCUUCCCUCCCAAUGACCGCGUCUUCGCUG
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Structure
        10          20        30        40        50        
CGGGCCUGGCUCGACUG--|    C       UG   A     G         AUGUUC 
                   GGGGG GAGGGAU  GAG GAAAG CAGUUCCUG      \
                   CCCUC CUUCUUG  CUC CUUUC GUCGGGGAC      C
GUCGCUUCUGCGCCAGUAA^    C       GU   -     G         CCCUCC 
    110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-185_5p

mirBase accessionMIMAT0048291
Sequence
0- UGGAGAGAAAGGCAGUUCCUGA -22
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Star sequence

Ocu-Mir-185_3p*

mirBase accessionMIMAT0048292
Sequence
35- AGGGGCUGGCUUUCCUCUGGU -56
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