| MirGeneDB ID | Cja-Mir-6529 |
|---|---|
| Family name | MIR-6529 (all species) |
| Seed | AGAGAUC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-6529 Cfa-Mir-6529 Cpo-Mir-6529 Dno-Mir-6529 Eca-Mir-6529 Ete-Mir-6529 Hsa-Mir-6529 Laf-Mir-6529 Mml-Mir-6529 Mmr-Mir-6529 Ocu-Mir-6529 Pab-Mir-6529 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021929.1: 76756576-76756636 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AACAUCUUAGAUGAGAAAACCUGUUCUCUUGAGAGAUCAGAGGCGCAGAGUGCGUCAAUGUCAAUGAAGCCUGUGCCUUUUACCUCUUUAAGAGCGCACGGUUUCAUUCUGCUUCUAAAUCGet precursor sequence |
| Structure | 10 20 30 40 50 AACAUCUUAGAUGAGAA- - U -| AUC A GCGUCAAU AACC UGU CUCUU GAGAG AGAGGCGCAG GU \ UUGG ACG GAGAA UUCUC UUUCCGUGUC CG G CUAAAUCUUCGUCUUACU C C U^ CAU - AAGUAACU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-6529_5p |
| mirBase accession | None |
| Sequence |
0- GAGAGAUCAGAGGCGCAGAGU -21
Get sequence
|
| Star sequence | Cja-Mir-6529_3p* |
| mirBase accession | None |
| Sequence |
39- CCUGUGCCUUUUACCUCUUUAA -61
Get sequence
|
