| MirGeneDB ID | Ete-Mir-6529 |
|---|
| Family name |
MIR-6529 (all species) |
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| Seed |
AGAGAUC |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-6529
Cfa-Mir-6529
Cja-Mir-6529
Cpo-Mir-6529
Dno-Mir-6529
Eca-Mir-6529
Hsa-Mir-6529
Laf-Mir-6529
Mml-Mir-6529
Mmr-Mir-6529
Ocu-Mir-6529
Pab-Mir-6529
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(echTel2) |
JH980333: 1729242-1729302 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
AACAUCUUAGAUGAGAAAACCUGUUCUCUUGAGAGAUCAGAGGCGCAGAGUGCAUCAAUGUCUACGAAGCCUGUGCCUUUUACCUCUUUAAGAGCGCACGGUUUCAUUCUGCUCCUAAACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACAUCUUAGAUGAGAA- - U -| AUC A GCAUCAAU
AACC UGU CUCUU GAGAG AGAGGCGCAG GU \
UUGG ACG GAGAA UUCUC UUUCCGUGUC CG G
CCAAAUCCUCGUCUUACU C C U^ CAU - AAGCAUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ete-Mir-6529_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GAGAGAUCAGAGGCGCAGAGUG -22
Get sequence
|
|---|
| Star sequence |
Ete-Mir-6529_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- CCUGUGCCUUUUACCUCUUUAA -61
Get sequence
|
|---|
