MirGeneDB ID | Pab-Mir-6529 |
---|---|
Family name | MIR-6529 (all species) |
Seed | AGAGAUC |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-6529 Cfa-Mir-6529 Cja-Mir-6529 Cpo-Mir-6529 Dno-Mir-6529 Eca-Mir-6529 Ete-Mir-6529 Hsa-Mir-6529 Laf-Mir-6529 Mml-Mir-6529 Mmr-Mir-6529 Ocu-Mir-6529 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068843.1: 18027681-18027741 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AACAUCUUAGAUGAGAAAACCUGUUCUCUUGAGAGAUCAGAGGCGCAGAGUGCGUCAGUGUCAAUGAAGCCUGUGCCUUUUACCUCUUUAAGAGCGUACGGUUUCAUUCUGCUCCUAAAUCGet precursor sequence |
Structure | 10 20 30 40 50 AACAUCUUAGAUGAGAA- - UU -| AUC A GCGUCAGU AACC UG CUCUU GAGAG AGAGGCGCAG GU \ UUGG AU GAGAA UUCUC UUUCCGUGUC CG G CUAAAUCCUCGUCUUACU C GC U^ CAU - AAGUAACU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-6529_5p |
mirBase accession | None |
Sequence |
0- GAGAGAUCAGAGGCGCAGAGU -21
Get sequence
|
Star sequence | Pab-Mir-6529_3p* (predicted) |
mirBase accession | None |
Sequence |
39- CCUGUGCCUUUUACCUCUUUAA -61
Get sequence
|