MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-6529

Family name MIR-6529 (all species)
Seed AGAGAUC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-6529  Cfa-Mir-6529  Cja-Mir-6529  Cpo-Mir-6529  Dno-Mir-6529  Eca-Mir-6529  Ete-Mir-6529  Hsa-Mir-6529  Laf-Mir-6529  Mml-Mir-6529  Mmr-Mir-6529  Ocu-Mir-6529 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM068843.1: 18027681-18027741 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACAUCUUAGAUGAGAAAACCUGUUCUCUUGAGAGAUCAGAGGCGCAGAGUGCGUCAGUGUCAAUGAAGCCUGUGCCUUUUACCUCUUUAAGAGCGUACGGUUUCAUUCUGCUCCUAAAUC
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Structure
        10         20         30         40        50          
AACAUCUUAGAUGAGAA-    -  UU     -|    AUC          A  GCGUCAGU 
                  AACC UG  CUCUU GAGAG   AGAGGCGCAG GU        \
                  UUGG AU  GAGAA UUCUC   UUUCCGUGUC CG        G
CUAAAUCCUCGUCUUACU    C  GC     U^    CAU          -  AAGUAACU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-6529_5p

mirBase accessionNone
Sequence
0- GAGAGAUCAGAGGCGCAGAGU -21
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Star sequence

Pab-Mir-6529_3p* (predicted)

mirBase accessionNone
Sequence
39- CCUGUGCCUUUUACCUCUUUAA -61
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