MirGeneDB ID | Cli-Mir-1662 |
Family name |
MIR-1662 (all species) |
Seed |
UGACAUC |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-1662
|
Paralogues |
|
Orthologues |
Aca-Mir-1662
Ami-Mir-1662
Cpi-Mir-1662
Gga-Mir-1662
Gja-Mir-1662-P3
Gja-Mir-1662-P4
Mun-Mir-1662
Spt-Mir-1662
Tgu-Mir-1662
Xla-Mir-1662-P1
Xla-Mir-1662-P2
Xtr-Mir-1662
|
Node of Origin (locus) |
Tetrapoda
|
Node of Origin (family) |
Tetrapoda
|
Genome context (colLiv2) |
scaffold450: 607999-608056 [-]
|
Precursor (pre-Mir +30nt flank) |
GGACGUCGUGCAUAGCUGUGCUCUAUGGGUUUGACAUCAUCAUACUUGGGAUGUAUGACACAAAGUCCCAAGCAGGCUGAUGUCAGGCCCAAGAUGGCUGCCAUCCUGUGUCGGUUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGACGUCGUGCAUAGCU---| GC A - AUA GUAUG
GU UCU UGGGUUUGACAUCA UC CUUGGGAU A
CG AGA ACCCGGACUGUAGU GG GAACCCUG C
AUUUGGCUGUGUCCUACCGU^ GU - C AC- AAACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-1662_5p |
mirBase accession | MIMAT0038689 |
Sequence |
0- UUGACAUCAUCAUACUUGGGAU -22
Get sequence
|
Star sequence |
Cli-Mir-1662_3p* |
mirBase accession | MIMAT0038690 |
Sequence |
36- CCCAAGCAGGCUGAUGUCAGGC -58
Get sequence
|