MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-1662

Family name MIR-1662 (all species)
Seed UGACAUC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1662  Ami-Mir-1662  Cli-Mir-1662  Cpi-Mir-1662  Gga-Mir-1662  Gja-Mir-1662-P3  Gja-Mir-1662-P4  Mun-Mir-1662  Tgu-Mir-1662  Xla-Mir-1662-P1  Xla-Mir-1662-P2  Xtr-Mir-1662 
Node of Origin (locus) Tetrapoda
Node of Origin (family) Tetrapoda
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01003143.1: 2536523-2536580 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCGUUGUGCAUAGCUGUGCUCUAUGGGUUUGACAUCAUCAUACUUGGGAUGUAUGACACAAAGUCCCAAGCAGACUGAUGUCAGGCCCAAGAUGGCUGCCAUCCUGUCUCGGUUUC
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Structure
        10           20        30         40        50        
CGGCGUUGUGCAUAGCU---| GC   A              -  AUA        GUAUG 
                    GU  UCU UGGGUUUGACAUCA UC   CUUGGGAU     A
                    CG  AGA ACCCGGACUGUAGU AG   GAACCCUG     C
CUUUGGCUCUGUCCUACCGU^ GU   -              C  AC-        AAACA 
      110       100         90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Mature sequence

Spt-Mir-1662_5p (predicted)

mirBase accessionNone
Sequence
0- UUGACAUCAUCAUACUUGGGAU -22
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Star sequence

Spt-Mir-1662_3p* (predicted)

mirBase accessionNone
Sequence
36- CCCAAGCAGACUGAUGUCAGGC -58
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