MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-1662

Family name MIR-1662 (all species)
Seed UGACAUC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1662  Ami-Mir-1662  Cli-Mir-1662  Cpi-Mir-1662  Gga-Mir-1662  Gja-Mir-1662-P3  Gja-Mir-1662-P4  Mun-Mir-1662  Spt-Mir-1662  Tgu-Mir-1662  Xla-Mir-1662-P1  Xla-Mir-1662-P2 
Node of Origin (locus) Tetrapoda
Node of Origin (family) Tetrapoda
Genome context
(xenTro9_add)		 chrUn_NW_016683472v1: 318148-318205 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCGUCGUGCACAGCUGCGUUCUCUGGGUUUGACAUCAUCAUACUUGGGAUGUAUGACACAAAGUCCCAAGCAAGCUGAUGUUAGGCCCAAGAUGGCUGCCAUCCUGUCUCGCUAAA
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Structure
        10           20        30        40        50        
CCGCGUCGUGCACAGCU---| GU   C              UCAUA        GUAUG 
                    GC  UCU UGGGUUUGACAUCA     CUUGGGAU     A
                    CG  AGA ACCCGGAUUGUAGU     GAACCCUG     C
AAAUCGCUCUGUCCUACCGU^ GU   -              CGAAC        AAACA 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-1662_5p
mirBase accessionNone
Sequence 
0- UUGACAUCAUCAUACUUGGGAU -22
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Star sequence

Xtr-Mir-1662_3p*
mirBase accessionNone
Sequence 
36- CCCAAGCAAGCUGAUGUUAGGC -58
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