MirGeneDB 3.0

MirGeneDB ID

Cpi-Mir-725

Family name MIR-725 (all species)
Seed UCAGUCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID
Paralogues
Orthologues Cmi-Mir-725  Dre-Mir-725  Gmo-Mir-725  Lch-Mir-725  Loc-Mir-725  Mal-Mir-725  Sto-Mir-725  Tni-Mir-725  Xla-Mir-725-P1  Xla-Mir-725-P2  Xtr-Mir-725 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(chrPic1)
JH584849: 2587890-2587946 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCUGGGAUCUGAGAUUGUGCAUCCACCUCACCUGAAACCGUGCCUGGAAUGACAUCAACCAAUUUCAGUCACUGUUUCUGGUGGAGUGGGUAGUCCACUGCGUCACCUACGACUU
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Structure
        10         20         30        40        50        
UCUCUGGGAUCUGAGAU-  UG -|     CU    U     C   C       GACAU 
                  UG  C AUCCAC  CACC GAAAC GUG CUGGAAU     \
                  AC  G UGGGUG  GUGG CUUUG CAC GACUUUA     C
UUCAGCAUCCACUGCGUC  CU A^     AG    U     U   U       ACCAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-725_5p* (predicted)

mirBase accessionNone
Sequence
0- CACCUGAAACCGUGCCUGGAAU -22
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Mature sequence

Cpi-Mir-725_3p (predicted)

mirBase accessionNone
Sequence
35- UUCAGUCACUGUUUCUGGUGGA -57
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