| MirGeneDB ID | Loc-Mir-725 |
|---|
| Family name |
MIR-725 (all species) |
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| Seed |
UCAGUCA |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cmi-Mir-725
Cpi-Mir-725
Dre-Mir-725
Gmo-Mir-725
Lch-Mir-725
Mal-Mir-725
Sto-Mir-725
Tni-Mir-725
Xla-Mir-725-P1
Xla-Mir-725-P2
Xtr-Mir-725
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Gnathostomata
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Genome context
(LepOcu1) |
LG14: 9139033-9139090 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCAUUAAACCAAAGACCAAGCUUUCCGCCCUGCUGGAAACAUUGCCUGAGAUGAGAAAGAGACAAUUUCAGUCAUUGUUUCUGGUAGUGCGAGCAGCUACUACCUACGGGCAUACGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCAUUAAACCAAAGACCA--| UUC C UG U C GAGAA
AGCU CGC CUGC GAAACA UG CUGAGAU A
UCGA GCG GAUG CUUUGU AC GACUUUA G
UUGCAUACGGGCAUCCAUCA^ CGA U GU U U ACAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-725_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGCUGGAAACAUUGCCUGAGAU -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-725_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UUCAGUCAUUGUUUCUGGUAGU -58
Get sequence
|
|---|
