| MirGeneDB ID | Lch-Mir-725 |
|---|---|
| Family name | MIR-725 (all species) |
| Seed | UCAGUCA |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cmi-Mir-725 Cpi-Mir-725 Dre-Mir-725 Gmo-Mir-725 Loc-Mir-725 Mal-Mir-725 Sto-Mir-725 Tni-Mir-725 Xla-Mir-725-P1 Xla-Mir-725-P2 Xtr-Mir-725 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (LatCha1_add) |
JH127538.1: 697287-697346 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAGCAAUGUGGGGAAAACCUCACCAUCAUUGCCUGCGCUGUGCCUGUUCUGUGGAGAAAUAGAGGAUUUCAGUCAUUGGUGCUGGUAAUCUGGAACCUUUCAUGAGCACUAAAUUCACAGet precursor sequence |
| Structure | 10 20 30 40 50 AGAGCAAUGUGGGGAAAACCUCA---| UC U - C UUCUGUGGAGA CCA AUUGCC GCGCUG UG CUG \ GGU UAAUGG CGUGGU AC GAC A ACACUUAAAUCACGAGUACUUUCCAA^ C- U U U UUUAGGAGAUA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Lch-Mir-725_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGCCUGCGCUGUGCCUGUUCU -21
Get sequence
|
| Mature sequence | Lch-Mir-725_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UUCAGUCAUUGGUGCUGGUAAU -60
Get sequence
|
