| MirGeneDB ID | Xla-Mir-725-P1 |
|---|
| Family name |
MIR-725 (all species) |
|---|
| Seed |
UCAGUCA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-725-P2
|
|---|
| Orthologues |
Cmi-Mir-725
Cpi-Mir-725
Dre-Mir-725
Gmo-Mir-725
Lch-Mir-725
Loc-Mir-725
Mal-Mir-725
Sto-Mir-725
Tni-Mir-725
Xtr-Mir-725
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Gnathostomata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030732.1: 101005302-101005357 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGCUACAUAUCUUCAGAGGGUUUUACGUUCCACUUGAAACUGUGCCUGUUGUGAAAAGCAGCAUUUCAGUCACGGUUUUUGGUGGAGUGUGAAUCUCUCAGCAACAGACCGAGAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCUACAUAUCUUCAGA--| U U C UU GAAA
GGG UUUACGUUCCACU GAAACUGUG CUG GU A
CUC AAGUGUGAGGUGG UUUUGGCAC GAC UA G
GAAGAGCCAGACAACGACU^ U U U UU CGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-725-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CACUUGAAACUGUGCCUGUUGU -22
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-725-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUCAGUCACGGUUUUUGGUGGA -56
Get sequence
|
|---|
