| MirGeneDB ID | Xla-Mir-725-P2 |
|---|
| Family name |
MIR-725 (all species) |
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| Seed |
UCAGUCA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-725-P1
|
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| Orthologues |
Cmi-Mir-725
Cpi-Mir-725
Dre-Mir-725
Gmo-Mir-725
Lch-Mir-725
Loc-Mir-725
Mal-Mir-725
Sto-Mir-725
Tni-Mir-725
Xtr-Mir-725
|
|---|
| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Gnathostomata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694877.1: 474494-474549 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGCUGCAUAGCUUCAGAGGGUUUUACGUUCCACUUGAAACUGUGCCUGUUGUGAAAAGUAGCAUUUCAGUCAUGGUUUUUUGUGGAGUGUGAAUCUCUCAGCAACAGACCAAGAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGCUGCAUAGCUUCAGA--| U UU C UU GAAA
GGG UUUACGUUCCAC GAAACUGUG CUG GU A
CUC AAGUGUGAGGUG UUUUGGUAC GAC UA G
GAAGAACCAGACAACGACU^ U UU U UU CGAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Xla-Mir-725-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CACUUGAAACUGUGCCUGUUGU -22
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-725-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUCAGUCAUGGUUUUUUGUGGA -56
Get sequence
|
|---|
