MirGeneDB ID | Cpo-Mir-1264 |
Family name |
MIR-1264 (all species) |
Seed |
AAGUCUU |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-1264
|
Paralogues |
|
Orthologues |
Bta-Mir-1264
Cfa-Mir-1264
Cja-Mir-1264
Eca-Mir-1264
Ete-Mir-1264
Hsa-Mir-1264
Laf-Mir-1264
Mml-Mir-1264
Mmr-Mir-1264
Mmu-Mir-1264
Ocu-Mir-1264
Pab-Mir-1264
Rno-Mir-1264
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_46: 5270718-5270780 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CAUUGUGUUUCUUCAUGCCUGGCAUAUAGCAGGUCCUCAAUAAGUAUUUGUUGAAAAAAUAAAUGAAUCAACAAGUCUUAUUUGAGCACCUGUUAUGUGUAGGAUAAAAAACUACGACUCAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAUUGUGUUUCUUCAUG---| G C - U GAAAAAAU
CCUG CAUAUAGCAGGU CUCAA UAAG AUUUGUU \
GGAU GUGUAUUGUCCA GAGUU AUUC UGAACAA A
AGACUCAGCAUCAAAAAAUA^ - C U - CUAAGUAA
120 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
To |
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Star sequence |
Cpo-Mir-1264_5p* (predicted) |
mirBase accession | MIMAT0047409 |
Sequence |
0- AGGUCCUCAAUAAGUAUUUGUU -22
Get sequence
|
Mature sequence |
Cpo-Mir-1264_3p |
mirBase accession | MIMAT0047410 |
Sequence |
41- CAAGUCUUAUUUGAGCACCUGU -63
Get sequence
|