MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-1264

Family name MIR-1264 (all species)
Seed GGUCCUC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1264  Cfa-Mir-1264  Cja-Mir-1264  Cpo-Mir-1264  Eca-Mir-1264  Ete-Mir-1264  Hsa-Mir-1264  Laf-Mir-1264  Mml-Mir-1264  Mmr-Mir-1264  Mmu-Mir-1264  Ocu-Mir-1264  Rno-Mir-1264 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054702.2: 120501747-120501809 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUGUGUUUCUCCAUGCCUGGCAUAUAGCAGGUCCUCAAUAAGUAUUUGUUGAAAGAAUAAAUAAACCAACAAGUCUUAUUUGAGCACCUGUUAUGUGGAGGAUAAAAUCCUACGACCCAGA
Get precursor sequence
Structure
        10           20        30        40         50        60 
AAUUGUGUUUCUCCAUG---|  GG            C     -    U       GAAAGAAU 
                    CCU  CAUAUAGCAGGU CUCAA UAAG AUUUGUU        \
                    GGA  GUGUAUUGUCCA GAGUU AUUC UGAACAA        A
AGACCCAGCAUCCUAAAAUA^  G-            C     U    -       CCAAAUAA 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-1264_5p (predicted)

mirBase accessionNone
Sequence
0- AGGUCCUCAAUAAGUAUUUGUU -22
Get sequence
Co-mature sequence

Pab-Mir-1264_3p

mirBase accessionNone
Sequence
41- CAAGUCUUAUUUGAGCACCUGU -63
Get sequence