MirGeneDB ID | Cpo-Mir-708 |
Family name |
MIR-708 (all species) |
Seed |
AGGAGCU |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-708
|
Paralogues |
|
Orthologues |
Bta-Mir-708
Cfa-Mir-708
Cja-Mir-708
Dno-Mir-708
Eca-Mir-708
Ete-Mir-708
Hsa-Mir-708
Laf-Mir-708
Mml-Mir-708
Mmr-Mir-708
Mmu-Mir-708
Ocu-Mir-708
Pab-Mir-708
Rno-Mir-708
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_40: 13990350-13990418 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
ACAGCUGUGUGUGAAAUGGUAACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUAGAUGACUUGCACAUGAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGACCUUACCCUAGUCAUCUCUGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAGCUGUGUGUGAAAU--| AA A A C GGGGUAGAUGAC
GGU CUGCCCUC AGGAGCUUACA UCUAG UG \
CCA GACGGGAG UCUUCGAGUGU AGAUC AC U
CGUCUCUACUGAUCCCAUU^ GG A C A ACAAGUACACGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-708_5p |
mirBase accession | MIMAT0047377 |
Sequence |
0- AAGGAGCUUACAAUCUAGCUGGG -23
Get sequence
|
Co-mature sequence |
Cpo-Mir-708_3p |
mirBase accession | MIMAT0047378 |
Sequence |
46- CAACUAGACUGUGAGCUUCUAGA -69
Get sequence
|