MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-872

Family name MIR-872 (all species)
Seed GAACUAU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-872
Paralogues
Orthologues Eca-Mir-872  Mmr-Mir-872  Mmu-Mir-872  Ocu-Mir-872  Rno-Mir-872 
Node of Origin (locus) Boreoeutheria
Node of Origin (family) Boreoeutheria
Genome context
(cavPor3)
scaffold_2: 5601257-5601317 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGGGGUUUUUACCAGAAGGUUACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUCUUUCCUGCCUGAACUAUUGUAGUAGCCUCCUAACUGGUCACCCCACCUCCAGUCUUGCCCC
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Structure
        10          20        30        40         50         
AGGGGUUUUUACCAGAA--   U   U     A        UGU-|        ACCUCAU 
                   GGU ACU GUUAG AGGUUACU    UAGUUCAGG       U
                   CCA UGG CAAUC UCCGAUGA    AUCAAGUCC       C
CCCCGUUCUGACCUCCACC   C   U     C        UGUU^        GUCCUUU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-872_5p*

mirBase accessionMIMAT0047389
Sequence
0- AAGGUUACUUGUUAGUUCAGG -21
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Mature sequence

Cpo-Mir-872_3p

mirBase accessionMIMAT0047390
Sequence
39- UGAACUAUUGUAGUAGCCUCCU -61
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