| MirGeneDB ID | Eca-Mir-872 |
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| Family name |
MIR-872 (all species) |
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| Seed |
AGGUUAC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-872
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| Paralogues |
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| Orthologues |
Cpo-Mir-872
Mmr-Mir-872
Mmu-Mir-872
Ocu-Mir-872
Rno-Mir-872
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| Node of Origin (locus) |
Boreoeutheria
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| Node of Origin (family) |
Boreoeutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009170.1: 44521289-44521348 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGGGGUUUUGUUAGAAGGUUACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCGUUAUUUCUUGCCUGAACUUUGCAGUAGCCUCCUAACUGGUCUCCCCACCUCCAGUCUAGCCCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGGGGUUUUGUUAGAA--| UU U A U U- ACCUCGU
GG ACU GUUAG AGGUUACU GU AGUUCAGG U
CC UGG CAAUC UCCGAUGA CG UCAAGUCC A
CCCCGAUCUGACCUCCACC^ UC U C - UU GUUCUUU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Mature sequence |
Eca-Mir-872_5p |
| mirBase accession | MIMAT0013119 |
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| Sequence |
0- AAGGUUACUUGUUAGUUCAGG -21
Get sequence
|
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| Star sequence |
Eca-Mir-872_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UGAACUUUGCAGUAGCCUCCU -60
Get sequence
|
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