MirGeneDB ID | Ocu-Mir-872 |
Family name |
MIR-872 (all species) |
Seed |
AGGUUAC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-872
|
Paralogues |
|
Orthologues |
Cpo-Mir-872
Eca-Mir-872
Mmr-Mir-872
Mmu-Mir-872
Rno-Mir-872
|
Node of Origin (locus) |
Boreoeutheria
|
Node of Origin (family) |
Boreoeutheria
|
Genome context (oryCun2_add) |
chr1: 26551750-26551810 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGGUUUUUGUUAGAAGGUUACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUAUUUCUUGCCUGAACUAUUGGAGUAGCCUCCUAACUGGUCUCCCCACCUCCAGUCUUGCCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGGUUUUUGUUAGAA-- UU U A GU-| ACCUCAU
GG ACU GUUAG AGGUUACUU UAGUUCAGG U
CC UGG CAAUC UCCGAUGAG AUCAAGUCC A
CCCCGUUCUGACCUCCACC UC U C GUU^ GUUCUUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-872_5p |
mirBase accession | MIMAT0048571 |
Sequence |
0- AAGGUUACUUGUUAGUUCAGG -21
Get sequence
|
Star sequence |
Ocu-Mir-872_3p* |
mirBase accession | MIMAT0048572 |
Sequence |
39- UGAACUAUUGGAGUAGCCUCCU -61
Get sequence
|