MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-872

Family name MIR-872 (all species)
Seed AGGUUAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-872
Paralogues
Orthologues Cpo-Mir-872  Eca-Mir-872  Mmr-Mir-872  Mmu-Mir-872  Rno-Mir-872 
Node of Origin (locus) Boreoeutheria
Node of Origin (family) Boreoeutheria
Genome context
(oryCun2_add)
chr1: 26551750-26551810 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGGUUUUUGUUAGAAGGUUACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUAUUUCUUGCCUGAACUAUUGGAGUAGCCUCCUAACUGGUCUCCCCACCUCCAGUCUUGCCCC
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Structure
        10          20        30        40         50         
GGGGGUUUUUGUUAGAA--  UU   U     A         GU-|        ACCUCAU 
                   GG  ACU GUUAG AGGUUACUU   UAGUUCAGG       U
                   CC  UGG CAAUC UCCGAUGAG   AUCAAGUCC       A
CCCCGUUCUGACCUCCACC  UC   U     C         GUU^        GUUCUUU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-872_5p

mirBase accessionMIMAT0048571
Sequence
0- AAGGUUACUUGUUAGUUCAGG -21
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Star sequence

Ocu-Mir-872_3p*

mirBase accessionMIMAT0048572
Sequence
39- UGAACUAUUGGAGUAGCCUCCU -61
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