Mir-872

MirGeneDB ID

Rno-Mir-872

Family name

MIR-872 (all species)

Seed

AGGUUAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-872

Paralogues

Orthologues

Cpo-Mir-872 Eca-Mir-872 Mmr-Mir-872 Mmu-Mir-872 Ocu-Mir-872

Node of Origin (locus)

Boreoeutheria

Node of Origin (family)

Boreoeutheria

Genome context
(rn6)

chr5: 113657737-113657797 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGGGGGUUGUGUAGACGGUAACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUACUUUCUGCCUGAACUAUUGCAGUAGCCUCCUAACUGGUUAUCCCACCUCCAUUCUUGCCCC

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Structure

        10          20        30        40          50         
CAGGGGGUUGUGUAGAC--       U     A       U   --|        ACCUCAU 
                   GGUAACU GUUAG AGGUUAC UGU  UAGUUCAGG       U
                   CUAUUGG CAAUC UCCGAUG ACG  AUCAAGUCC       A
CCCCGUUCUUACCUCCACC       U     C       -   UU^        GUCUUUC 
 .       110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn	Rn

Mature sequence

Rno-Mir-872_5p

mirBase accession

MIMAT0005282

Sequence

0- AAGGUUACUUGUUAGUUCAGG -21

Get sequence

Proposed targets

microrna.org: MIMAT0005282
TargetScanVert: rno-miR-872-5p
miRDB: MIMAT0005282

Star sequence

Rno-Mir-872_3p*

mirBase accession

MIMAT0005283

Sequence

39- UGAACUAUUGCAGUAGCCUCCU -61

Get sequence

Proposed targets

microrna.org: MIMAT0005283
TargetScanVert: rno-miR-872-3p
miRDB: MIMAT0005283