MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-872

Family name MIR-872 (all species)
Seed AGGUUAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-872
Paralogues
Orthologues Cpo-Mir-872  Eca-Mir-872  Mmr-Mir-872  Mmu-Mir-872  Ocu-Mir-872 
Node of Origin (locus) Boreoeutheria
Node of Origin (family) Boreoeutheria
Genome context
(rn6)		 chr5: 113657737-113657797 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGGGGUUGUGUAGACGGUAACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUACUUUCUGCCUGAACUAUUGCAGUAGCCUCCUAACUGGUUAUCCCACCUCCAUUCUUGCCCC
Get precursor sequence
Structure
        10          20        30        40          50         
CAGGGGGUUGUGUAGAC--       U     A       U   --|        ACCUCAU 
                   GGUAACU GUUAG AGGUUAC UGU  UAGUUCAGG       U
                   CUAUUGG CAAUC UCCGAUG ACG  AUCAAGUCC       A
CCCCGUUCUUACCUCCACC       U     C       -   UU^        GUCUUUC 
 .       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-872_5p
mirBase accessionMIMAT0005282
Sequence 
0- AAGGUUACUUGUUAGUUCAGG -21
Get sequence
Proposed targets microrna.org: MIMAT0005282
TargetScanVert: rno-miR-872-5p
miRDB: MIMAT0005282
Star sequence

Rno-Mir-872_3p*
mirBase accessionMIMAT0005283
Sequence 
39- UGAACUAUUGCAGUAGCCUCCU -61
Get sequence
Proposed targets microrna.org: MIMAT0005283
TargetScanVert: rno-miR-872-3p
miRDB: MIMAT0005283