Mir-872

MirGeneDB ID

Mmu-Mir-872

Family name

MIR-872 (all species)

Seed

AGGUUAC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-872

Paralogues

Orthologues

Cpo-Mir-872 Ocu-Mir-872 Rno-Mir-872

Node of Origin (locus)

Glires

Node of Origin (family)

Glires

Genome context
(mm10)

chr4: 94665167-94665227 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGGGGGUUGUGUAGAUGGUAACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUACUUUCUGCCUGAACUAUUGCAGUAGCCUCCUAACUGGUUAUCCCACCUCCAUUCUUGCCCC

Get precursor sequence

Structure

        10          20        30        40          50         
CAGGGGGUUGUGUAGAU--       U     A       U   --|        ACCUCAU 
                   GGUAACU GUUAG AGGUUAC UGU  UAGUUCAGG       U
                   CUAUUGG CAAUC UCCGAUG ACG  AUCAAGUCC       A
CCCCGUUCUUACCUCCACC       U     C       -   UU^        GUCUUUC 
 .       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

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Mature sequence

Mmu-Mir-872_5p

mirBase accession

MIMAT0004934

Sequence

0- AAGGUUACUUGUUAGUUCAGG -21

Get sequence

Proposed targets

microrna.org: MIMAT0004934
TargetScanVert: mmu-miR-872-5p
miRDB: MIMAT0004934

Star sequence

Mmu-Mir-872_3p*

mirBase accession

MIMAT0004935

Sequence

39- UGAACUAUUGCAGUAGCCUCCU -61

Get sequence

Proposed targets

microrna.org: MIMAT0004935
TargetScanVert: mmu-miR-872-3p
miRDB: MIMAT0004935