MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-2499

Family name MIR-2499 (all species)
Seed UGCGGAU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-2499
Paralogues
Orthologues
Node of Origin (locus) D. melanogaster
Node of Origin (family) D. melanogaster
Genome context
(Drosophila_melanogaster_BDGP6)
X: 19557029-19557090 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2499)
Mir-972 X: 19551171-19551226 [+] UCSC Ensembl
Mir-973 X: 19551546-19551611 [+] UCSC Ensembl
Mir-974 X: 19551702-19551763 [+] UCSC Ensembl
Mir-2499 X: 19557029-19557090 [+] UCSC Ensembl
Mir-975 X: 19558768-19558828 [+] UCSC Ensembl
Mir-976 X: 19558917-19558975 [+] UCSC Ensembl
Mir-977 X: 19559046-19559108 [+] UCSC Ensembl
Mir-978-v1 X: 19561251-19561313 [+] UCSC Ensembl
Mir-978-v2 X: 19561252-19561312 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGUUCGCCUCCUUGCUGUGGGUGUGGUUGCGUGCGUAGACGUCAGCGCAAUGCCUUUGUUUGGCGGCAUGCGGAUGACAUUCACGUCCGUAUCCGCACACACAUCCGCAUCCAUAUAUCCG
Get precursor sequence
Structure
        10          20        30        40         50        60
GCGUUCGCCUCCUUGCU--   G      U    UG   AG C    G-|   A   CUUUG 
                   GUG GUGUGG UGCG  CGU  A GUCA  CGCA UGC     U
                   CAC CACGCC AUGC  GCA  U CAGU  GCGU ACG     U
GCCUAUAUACCUACGCCUA   A      U    CU   CU A    AG^   -   GCGGU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-2499_5p*

mirBase accessionMIMAT0012212
Sequence
0- CGUGCGUAGACGUCAGCGCAAUGC -24
Get sequence
Proposed targets microrna.org: MIMAT0012212
Mature sequence

Dme-Mir-2499_3p

mirBase accessionMIMAT0012213
Sequence
38- AUGCGGAUGACAUUCACGUCCGUA -62
Get sequence
Proposed targets microrna.org: MIMAT0012213