Mir-972

MirGeneDB ID

Dme-Mir-972

Family name

MIR-972 (all species)

Seed

GUACAAU

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-972

Paralogues

Orthologues

Dsi-Mir-972

Node of Origin (locus)

D. melanogaster + D. simulans

Node of Origin (family)

D. melanogaster + D. simulans

Genome context
(Drosophila_melanogaster_BDGP6)

X: 19551171-19551226 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-972)

Mir-972 X: 19551171-19551226 [+] UCSC Ensembl
Mir-973 X: 19551546-19551611 [+] UCSC Ensembl
Mir-974 X: 19551702-19551763 [+] UCSC Ensembl
Mir-2499 X: 19557029-19557090 [+] UCSC Ensembl
Mir-975 X: 19558768-19558828 [+] UCSC Ensembl
Mir-976 X: 19558917-19558975 [+] UCSC Ensembl
Mir-977 X: 19559046-19559108 [+] UCSC Ensembl
Mir-978-v1 X: 19561251-19561313 [+] UCSC Ensembl
Mir-978-v2 X: 19561252-19561312 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUAGCUAAAGAGAAUGAUAGGGAAAUUGCUAAAUAUUUUUUUUGUAUAAAUAACUUUUAACUUUUGUACAAUACGAAUAUUUAGGCAUUUCUCAAAUCAAAGAUUUGCAAGCCAA

Get precursor sequence

Structure

        10        20          30         40        50       
AAUAGCUAAAGAGAAUGAUA--|      U  -         UUU         UAACU 
                      GGGAAAU GC UAAAUAUUU   UUGUAUAAA     U
                      CUCUUUA CG AUUUAUAAG   AACAUGUUU     U
AACCGAACGUUUAGAAACUAAA^      -  G         CAU         UCAAU 
    110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-972_5p*

mirBase accession

MIMAT0020869

Sequence

0- UAAAUAUUUUUUUUGUAUAAA -21

Get sequence

Mature sequence

Dme-Mir-972_3p

mirBase accession

MIMAT0005488

Sequence

35- UGUACAAUACGAAUAUUUAGG -56

Get sequence

Proposed targets

microrna.org: MIMAT0005488
TargetScanFly: dme-miR-972