MirGeneDB 2.1

MirGeneDB ID

Dsi-Mir-4983

Family name MIR-4983 (all species)
Seed AAAUUCU
Species Fruit fly (Drosophila simulans)
MiRBase ID
Paralogues
Orthologues Dme-Mir-4983 
Node of Origin (locus) D. melanogaster + D. simulans
Node of Origin (family) D. melanogaster + D. simulans
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2R: 16127028-16127099 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4983)
Mir-2-P6c 2R: 16150571-16150636 [-] UCSC Ensembl
Mir-2-P6b 2R: 16150723-16150784 [-] UCSC Ensembl
Mir-2-P6a 2R: 16150863-16150925 [-] UCSC Ensembl
Mir-2-P5 2R: 16151011-16151070 [-] UCSC Ensembl
Mir-9-P9 2R: 16151148-16151204 [-] UCSC Ensembl
Mir-279-P2 2R: 16151283-16151358 [-] UCSC Ensembl
Mir-3-P1 2R: 16151447-16151503 [-] UCSC Ensembl
Mir-3-P2 2R: 16151557-16151615 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUCUGCCCGCUGGCUGGCUGUCUUGACCCACUUGCUCGUUUGCAUUUCUGAAAAAUGUAUACGCAAAAACCAAAAUCAGAAAUUCUUUUGAGCAAGUGUGUCAUGAAAUUGCCAUUCGUUUCUGCUCUAU
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Structure
        10        20          30        40        50        60     
ACAUCUGCCCGCUGGCUG  UG--| U    C          UUUGC       AAAAAUGUAUAC 
                  GC    UC UGAC CACUUGCUCG     AUUUCUG            G
                  CG    AG ACUG GUGAACGAGU     UAAAGAC            C
UAUCUCGUCUUUGCUUAC  UUAA^ U    U          UUUCU       UAAAACCAAAAA 
130       120       110       100        90        80        70
Deep sequencing
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-4983_5p*

mirBase accessionNone
Sequence
0- CACUUGCUCGUUUGCAUUUCUG -22
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Mature sequence

Dsi-Mir-4983_3p

mirBase accessionNone
Sequence
50- GAAAUUCUUUUGAGCAAGUGUG -72
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