MirGeneDB ID | Eca-Mir-326 |
Family name |
MIR-326 (all species) |
Seed |
CUCUGGG |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-326
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Paralogues |
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Orthologues |
Bta-Mir-326
Cfa-Mir-326
Cja-Mir-326
Cpo-Mir-326
Dno-Mir-326
Ete-Mir-326
Hsa-Mir-326
Laf-Mir-326
Mml-Mir-326
Mmr-Mir-326
Mmu-Mir-326
Ocu-Mir-326
Pab-Mir-326
Rno-Mir-326
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Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009154.1: 70997184-70997243 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUCUCCGGAGCCUCGUCUGUCUGUUGGGCUGGAGGCAGGGCCUUUGUGAAGGCGAGUUGUGCUGGGAUCGCCUCUGGGCCCUUCCUCCAGCCCAGAGGCGGAUUCAUCAUGAGGCUGGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUCUCCGGAGCCUCGUC---| G C UUGUGA AGUUGU
UGUCU UUGGGCUGGAGG AGGGCCU AGGCG G
GCGGA GACCCGACCUCC UCCCGGG UCCGC C
GUGGUCGGAGUACUACUUAG^ - U UC---- UAGGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
Yes
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Motifs | No |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-326_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGAGGCAGGGCCUUUGUGAAGGCG -24
Get sequence
|
Mature sequence |
Eca-Mir-326_3p |
mirBase accession | MIMAT0012989 |
Sequence |
40- CCUCUGGGCCCUUCCUCCAG -60
Get sequence
|