MirGeneDB ID | Laf-Mir-326 |
Family name |
MIR-326 (all species) |
Seed |
CUCUGGG |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-326
Cfa-Mir-326
Cja-Mir-326
Cpo-Mir-326
Dno-Mir-326
Eca-Mir-326
Ete-Mir-326
Hsa-Mir-326
Mml-Mir-326
Mmr-Mir-326
Mmu-Mir-326
Ocu-Mir-326
Pab-Mir-326
Rno-Mir-326
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010106.1: 2117064-2117123 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCUCCGGAGCCUCAUCUGUCUGUUGGGCUGGAGGCAGGGCCUUUGUGAAGGCGUGUGGUGCUCGGAUCGCCUCUGGGCCCUUCCUCCAGCCCAGAGGCGGAUUCACCAUGAGGCUGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCCUCCGGAGCCUCAUC---| G C UUGUGA UGUGGU
UGUCU UUGGGCUGGAGG AGGGCCU AGGCG G
GCGGA GACCCGACCUCC UCCCGGG UCCGC C
GGAGUCGGAGUACCACUUAG^ - U UC---- UAGGCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Laf-Mir-326_5p* |
mirBase accession | None |
Sequence |
0- GGAGGCAGGGCCUUUGUGAAGGCG -24
Get sequence
|
Mature sequence |
Laf-Mir-326_3p |
mirBase accession | None |
Sequence |
40- CCUCUGGGCCCUUCCUCCAG -60
Get sequence
|