| MirGeneDB ID | Egr-Mir-2160-P7 |
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| Family name |
MIR-2160 (all species) |
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| Seed |
GGUGCUU |
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| Species |
Hydatid worm (Echinococcus granulosus) |
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| MiRBase ID |
egr-mir-10227d
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| Paralogues |
Egr-Mir-2160-P2a
Egr-Mir-2160-P2b
Egr-Mir-2160-P3
Egr-Mir-2160-P4
Egr-Mir-2160-P5
Egr-Mir-2160-P6
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| Orthologues |
Gsa-Mir-2160
Pcr-Mir-2160
Sma-Mir-2160
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| Node of Origin (locus) |
E. granulosus
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| Node of Origin (family) |
Platyhelminthes
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Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000203.1: 69029-69085 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAACCGCGAAAGAUGUGGAGUGAGUGAGUGUGGUGCUUGAUCAUACCACUGAUAGACAUGGAUCAGUUGUAUCAUCAAUGCAUCACACUCACUCACGUGAGGCAGCCAGUUCUUGUC
Get precursor sequence
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| Structure | 10 20 30 40 50
GAACCGCGAAAGAUGUGGA-- -| C C UAGA
GUGAGUGAGUGUGGUGC UUGAU AUAC ACUGA C
CACUCACUCACACUACG AACUA UAUG UGACU A
CUGUUCUUGACCGACGGAGUG U^ C U AGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Er |
Er |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Mature sequence |
Egr-Mir-2160-P7_5p (predicted) |
| mirBase accession | MIMAT0041227 |
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| Sequence |
0- UGGUGCUUGAUCAUACCACUGA -22
Get sequence
|
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| Star sequence |
Egr-Mir-2160-P7_3p* (predicted) |
| mirBase accession | MIMAT0041228 |
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| Sequence |
34- AGUUGUAUCAUCAAUGCAUCACA -57
Get sequence
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