MirGeneDB 3.0

MirGeneDB ID

Egr-Mir-2160-P7

Family name MIR-2160 (all species)
Seed GGUGCUU
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-10227d
Paralogues Egr-Mir-2160-P2a  Egr-Mir-2160-P2b  Egr-Mir-2160-P3  Egr-Mir-2160-P4  Egr-Mir-2160-P5  Egr-Mir-2160-P6 
Orthologues Gsa-Mir-2160  Pcr-Mir-2160  Sma-Mir-2160 
Node of Origin (locus) E. granulosus
Node of Origin (family) Platyhelminthes
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000203.1: 69029-69085 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAACCGCGAAAGAUGUGGAGUGAGUGAGUGUGGUGCUUGAUCAUACCACUGAUAGACAUGGAUCAGUUGUAUCAUCAAUGCAUCACACUCACUCACGUGAGGCAGCCAGUUCUUGUC
Get precursor sequence
Structure
        10          20        30         40        50       
GAACCGCGAAAGAUGUGGA--                 -|    C    C     UAGA 
                     GUGAGUGAGUGUGGUGC UUGAU AUAC ACUGA    C
                     CACUCACUCACACUACG AACUA UAUG UGACU    A
CUGUUCUUGACCGACGGAGUG                 U^    C    U     AGGU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Mature sequence

Egr-Mir-2160-P7_5p (predicted)

mirBase accessionMIMAT0041227
Sequence
0- UGGUGCUUGAUCAUACCACUGA -22
Get sequence
Star sequence

Egr-Mir-2160-P7_3p* (predicted)

mirBase accessionMIMAT0041228
Sequence
34- AGUUGUAUCAUCAAUGCAUCACA -57
Get sequence