MirGeneDB ID | Egr-Mir-2160-P7 |
Family name |
MIR-2160 (all species) |
Seed |
GGUGCUU |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
egr-mir-10227d
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Paralogues |
Egr-Mir-2160-P2a
Egr-Mir-2160-P2b
Egr-Mir-2160-P3
Egr-Mir-2160-P4
Egr-Mir-2160-P5
Egr-Mir-2160-P6
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Orthologues |
Gsa-Mir-2160
Pcr-Mir-2160
Sma-Mir-2160
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Node of Origin (locus) |
E. granulosus
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Node of Origin (family) |
Platyhelminthes
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Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000203.1: 69029-69085 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
GAACCGCGAAAGAUGUGGAGUGAGUGAGUGUGGUGCUUGAUCAUACCACUGAUAGACAUGGAUCAGUUGUAUCAUCAAUGCAUCACACUCACUCACGUGAGGCAGCCAGUUCUUGUC
Get precursor sequence
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Structure | 10 20 30 40 50
GAACCGCGAAAGAUGUGGA-- -| C C UAGA
GUGAGUGAGUGUGGUGC UUGAU AUAC ACUGA C
CACUCACUCACACUACG AACUA UAUG UGACU A
CUGUUCUUGACCGACGGAGUG U^ C U AGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
Unknown
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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Mature sequence |
Egr-Mir-2160-P7_5p (predicted) |
mirBase accession | MIMAT0041227 |
Sequence |
0- UGGUGCUUGAUCAUACCACUGA -22
Get sequence
|
Star sequence |
Egr-Mir-2160-P7_3p* (predicted) |
mirBase accession | MIMAT0041228 |
Sequence |
34- AGUUGUAUCAUCAAUGCAUCACA -57
Get sequence
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