Mir-2160-P2b

MirGeneDB ID

Egr-Mir-2160-P2b

Family name

MIR-2160 (all species)

Seed

GGCGCUU

Species

Hydatid worm (Echinococcus granulosus)

MiRBase ID

egr-mir-10229b

Paralogues

Egr-Mir-2160-P2a Egr-Mir-2160-P3 Egr-Mir-2160-P4 Egr-Mir-2160-P5 Egr-Mir-2160-P6 Egr-Mir-2160-P7

Orthologues

Gsa-Mir-2160 Pcr-Mir-2160 Sma-Mir-2160

Node of Origin (locus)

E. granulosus

Node of Origin (family)

Platyhelminthes

Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)

APAU02000041.1: 53714-53776 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2160-P2b)

Mir-2160-P6 APAU02000041.1: 46144-46200 [+] UCSC Ensembl
Mir-2160-P3 APAU02000041.1: 46431-46487 [+] UCSC Ensembl
Mir-2160-P5 APAU02000041.1: 46714-46770 [+] UCSC Ensembl
Mir-2160-P4 APAU02000041.1: 52255-52311 [+] UCSC Ensembl
Mir-2160-P2b APAU02000041.1: 53714-53776 [-] UCSC Ensembl
Mir-2160-P2a APAU02000041.1: 53907-53961 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUACUCUGAUUGAUCCAGUGAGGUAGAGUGGCGCUUGAUUUCAACGCUGAUAGAAAACACCGUACAUCAGUGUUGAUGUCAGGUUGCUUCUUUACUCCAUUCAAAACGGCACUGAGUGAGU

Get precursor sequence

Structure

        10          20        30         40        50        60
GCUUACUCUGAUUGAUCC--    AG      U   -|      U          UAGAAAA 
                    AGUG  GUAGAG GGC GCUUGAU UCAACGCUGA       C
                    UUAC  CAUUUC UCG UGGACUG AGUUGUGACU       A
UGAGUGAGUCACGGCAAAAC    CU      U   U^      U          ACAUGCC 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Eg	Ev	Ev	Ad	Fe	Fe	Hy	Hy	Hy	Li	Li	Li	Mi	Mi	Mi	Po	Po	Po	Po	Po	Po	Po	Pr	Pr	Pr	Sm

Mature sequence

Egr-Mir-2160-P2b_5p (predicted)

mirBase accession

MIMAT0041199

Sequence

0- UGGCGCUUGAUUUCAACGCUGA -22

Get sequence

Star sequence

Egr-Mir-2160-P2b_3p* (predicted)

mirBase accession

MIMAT0041200

Sequence

40- AGUGUUGAUGUCAGGUUGCUUCU -63

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