MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-2160

Family name MIR-2160 (all species)
Seed AACAUUU
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-8437
Paralogues
Orthologues Egr-Mir-2160-P2a  Egr-Mir-2160-P2b  Egr-Mir-2160-P3  Egr-Mir-2160-P4  Egr-Mir-2160-P5  Egr-Mir-2160-P6  Egr-Mir-2160-P7  Gsa-Mir-2160  Pcr-Mir-2160  Sme-Mir-2160-P1a  Sme-Mir-2160-P1b 
Node of Origin (locus) Platyhelminthes
Node of Origin (family) Platyhelminthes
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601626.3: 42306730-42306795 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGUUUCACUUUAAAUGAUUUUUACAUUUGGCGCUUAGUAGAAUGUCACCGUAAACAUUAUUAUACAACGGUAACAUUUACUAAGAGCUCAGAUGUAGAGUUAUGAGCAUCAGUUUUAUAUUAU
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Structure
        10            20        30         40        50        60  
UUUUGUUUCACUUUAAA----|      U       -  G         A   C   GUAAACAUU 
                     UGAUUUU ACAUUUG GC CUUAGUAGA UGU ACC         \
                     AUUGAGA UGUAGAC CG GAAUCAUUU ACA UGG         A
UAUUAUAUUUUGACUACGAGU^      -       U  A         -   A   CAACAUAUU 
    120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
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Star sequence

Sma-Mir-2160_5p*
mirBase accessionMIMAT0033578
Sequence 
0- UGGCGCUUAGUAGAAUGUCACC -22
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Mature sequence

Sma-Mir-2160_3p
mirBase accessionMIMAT0033579
Sequence 
43- UAACAUUUACUAAGAGCUCAGAU -66
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