Mir-2160

MirGeneDB ID

Sma-Mir-2160

Family name

MIR-2160 (all species)

Seed

AACAUUU

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-8437

Paralogues

Orthologues

Egr-Mir-2160-P2a Egr-Mir-2160-P2b Egr-Mir-2160-P3 Egr-Mir-2160-P4 Egr-Mir-2160-P5 Egr-Mir-2160-P6 Egr-Mir-2160-P7 Gsa-Mir-2160 Pcr-Mir-2160 Sme-Mir-2160-P1a Sme-Mir-2160-P1b

Node of Origin (locus)

Platyhelminthes

Node of Origin (family)

Platyhelminthes

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601626.3: 42306730-42306795 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUGUUUCACUUUAAAUGAUUUUUACAUUUGGCGCUUAGUAGAAUGUCACCGUAAACAUUAUUAUACAACGGUAACAUUUACUAAGAGCUCAGAUGUAGAGUUAUGAGCAUCAGUUUUAUAUUAU

Get precursor sequence

Structure

        10            20        30         40        50        60  
UUUUGUUUCACUUUAAA----|      U       -  G         A   C   GUAAACAUU 
                     UGAUUUU ACAUUUG GC CUUAGUAGA UGU ACC         \
                     AUUGAGA UGUAGAC CG GAAUCAUUU ACA UGG         A
UAUUAUAUUUUGACUACGAGU^      -       U  A         -   A   CAACAUAUU 
    120       110       100         90        80         70