MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-2160-P1a

Family name MIR-2160 (all species)
Seed GGCGCUU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2160-1
Paralogues Sme-Mir-2160-P1b 
Orthologues Gsa-Mir-2160  Pcr-Mir-2160  Sma-Mir-2160 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Platyhelminthes
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000046_dd_Smes_g4_46: 574874-574938 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2160-P1a)		 Mir-2160-P1a NNSW01000046_dd_Smes_g4_46: 574874-574938 [+] UCSC Ensembl
Mir-2160-P1b NNSW01000046_dd_Smes_g4_46: 574874-574938 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAUAGCAUAAAAAUCUUUGUGAUUAAAUAUGGCGCUUAUGUGUAGAACCGGUUGUACUAUAUUUUUAAACUGGUUUUUCAUGUAAGAGCCCAAAUAGUAUCACAAAAAUCAUCAAACAAUGUAA
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Structure
        10          20        30         40        50        60 
GUAUAGCAUAAAAAUCU--       UAAAUAU-|  G        U        UUGUACUA 
                   UUGUGAU        GGC CUUAUGUG AGAACCGG        U
                   AACACUA        CCG GAAUGUAC UUUUGGUC        A
AAUGUAACAAACUACUAAA       UGAUAAAC^  A        U        AAAUUUUU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-2160-P1a_5p
mirBase accessionMIMAT0011254
Sequence 
0- UGGCGCUUAUGUGUAGAACCGG -22
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Star sequence

Sme-Mir-2160-P1a_3p* (predicted)
mirBase accessionMIMAT0011416
Sequence 
42- GGUUUUUCAUGUAAGAGCCCAAA -65
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