MirGeneDB ID | Pcr-Mir-2160 |
Family name |
MIR-2160 (all species) |
Seed |
GUGUACA |
Species |
Tiger flatworm (Prostheceraeus crozieri ) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Egr-Mir-2160-P2a
Egr-Mir-2160-P2b
Egr-Mir-2160-P3
Egr-Mir-2160-P4
Egr-Mir-2160-P5
Egr-Mir-2160-P6
Egr-Mir-2160-P7
Gsa-Mir-2160
Sma-Mir-2160
Sme-Mir-2160-P1a
Sme-Mir-2160-P1b
|
Node of Origin (locus) |
Platyhelminthes
|
Node of Origin (family) |
Platyhelminthes
|
Genome context (GCA_907163375.1_PROCRO_GENOME_genomic) |
CAJQUW010005997.1: 54784-54848 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCGAAAGUCGCCAACCUUGUGAUGUCACACUGGCGCUUCUAUUGUCCACACUGUACGAACAUUUGAAAAUCGCAGUGUACAGUAGUGGUGCCCGUCAUCGUCACACCGAACAACUCAAGGCGAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCGAAAGUCGCCAACCU---| UCAC U U CC ACGAACAU
UGUGAUG AC GGCGCU CUAUUGU ACACUGU \
ACACUGC UG CCGUGG GAUGACA UGUGACG U
UUAGCGGAACUCAACAAGCC^ UAC- C U -- CUAAAAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pcr-Mir-2160_5p* |
mirBase accession | None |
Sequence |
0- UGGCGCUUCUAUUGUCCACACUGU -24
Get sequence
|
Mature sequence |
Pcr-Mir-2160_3p |
mirBase accession | None |
Sequence |
43- AGUGUACAGUAGUGGUGCCCGU -65
Get sequence
|