Mir-2160-P4

MirGeneDB ID

Egr-Mir-2160-P4

Family name

MIR-2160 (all species)

Seed

GGCGCUU

Species

Hydatid worm (Echinococcus granulosus)

MiRBase ID

egr-mir-10227a

Paralogues

Egr-Mir-2160-P2a Egr-Mir-2160-P2b Egr-Mir-2160-P3 Egr-Mir-2160-P5 Egr-Mir-2160-P6 Egr-Mir-2160-P7

Orthologues

Gsa-Mir-2160 Pcr-Mir-2160 Sma-Mir-2160

Node of Origin (locus)

E. granulosus

Node of Origin (family)

Platyhelminthes

Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)

APAU02000041.1: 52255-52311 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2160-P4)

Mir-2160-P6 APAU02000041.1: 46144-46200 [+] UCSC Ensembl
Mir-2160-P3 APAU02000041.1: 46431-46487 [+] UCSC Ensembl
Mir-2160-P5 APAU02000041.1: 46714-46770 [+] UCSC Ensembl
Mir-2160-P4 APAU02000041.1: 52255-52311 [+] UCSC Ensembl
Mir-2160-P2b APAU02000041.1: 53714-53776 [-] UCSC Ensembl
Mir-2160-P2a APAU02000041.1: 53907-53961 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGGUGAUUCCGUUUUUAUGUAGGAGGAUGUGGCGCUUUCUAACUUUACUGAUAGUGAUUUAUCAGUAAAGUCAUAAAUGCACCUCAUUCCCUUACGUGAGACAACCAGAUUCUACC

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Structure

        10          20        30         40        50       
UAGGUGAUUCCGUUUUU--       A     U  C  -|  CUA          UAGU 
                   AUGUAGG GGAUG GG GC UUU   ACUUUACUGA    G
                   UGCAUUC CUUAC CC CG AAA   UGAAAUGACU    A
CCAUCUUAGACCAACAGAG       C     U  A  U^  UAC          AUUU 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Eg	Ev	Ev	Ad	Fe	Fe	Hy	Hy	Hy	Li	Li	Li	Mi	Mi	Mi	Po	Po	Po	Po	Po	Po	Po	Pr	Pr	Pr	Sm

Mature sequence

Egr-Mir-2160-P4_5p (predicted)

mirBase accession

MIMAT0041179

Sequence

0- UGGCGCUUUCUAACUUUACUGA -22

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Star sequence

Egr-Mir-2160-P4_3p* (predicted)

mirBase accession

MIMAT0041180

Sequence

34- AGUAAAGUCAUAAAUGCACCUCA -57

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