MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-2160

Family name MIR-2160 (all species)
Seed GGCGCUU
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-9389
Paralogues
Orthologues Egr-Mir-2160-P2a  Egr-Mir-2160-P2b  Egr-Mir-2160-P3  Egr-Mir-2160-P4  Egr-Mir-2160-P5  Egr-Mir-2160-P6  Egr-Mir-2160-P7  Pcr-Mir-2160  Sma-Mir-2160  Sme-Mir-2160-P1a  Sme-Mir-2160-P1b 
Node of Origin (locus) Platyhelminthes
Node of Origin (family) Platyhelminthes
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006951498: 7116-7189 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCCUUUGCCCAACUGUAAUUCACACAACGGCGCUUUGAUUGUCCACACUGAAUCAUCUCUGCACAUGUUUGCAACGUUCAGUGUGCACACAAGGUUCCAUAUAGUGAAUUUACCAAACACCAAAAGGGAAG
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Structure
        10          20        30        40        50        60       
AAGUCCUUUGCCCAACU-  -|      ACAAC  C      AU   C        AUCAUCUCUGCA 
                  GU AAUUCAC     GG GCUUUG  UGU CACACUGA            C
                  CA UUAAGUG     CC UGGAAC  ACA GUGUGACU            A
GAAGGGAAAACCACAAAC  U^      AUAUA  U      --   C        UGCAACGUUUGU 
  130       120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Gs
Mature sequence

Gsa-Mir-2160_5p
mirBase accessionMIMAT0035318
Sequence 
0- CGGCGCUUUGAUUGUCCACACUGA -24
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Star sequence

Gsa-Mir-2160_3p*
mirBase accessionMIMAT0035319
Sequence 
52- AGUGUGCACACAAGGUUCCAUA -74
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