Mir-137-P1-v2

MirGeneDB ID

Ete-Mir-137-P1-v2

Family name

MIR-137 (all species)

Seed

AUUGCUU

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-137-P1-v1

Orthologues

Aca-Mir-137-P1-v1 Aca-Mir-137-P1-v2 Ami-Mir-137-P1-v1 Ami-Mir-137-P1-v2 Asu-Mir-137 Bfl-Mir-137 Bta-Mir-137-P1-v1 Bta-Mir-137-P1-v2 Cbr-Mir-137 Cel-Mir-137 Cfa-Mir-137-P1-v1 Cfa-Mir-137-P1-v2 Cgi-Mir-137 Cli-Mir-137-P1-v1 Cli-Mir-137-P1-v2 Cmi-Mir-137-P1 Cpi-Mir-137-P1-v1 Cpi-Mir-137-P1-v2 Cte-Mir-137 Dan-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dno-Mir-137-P1-v1 Dno-Mir-137-P1-v2 Dpu-Mir-137 Dre-Mir-137-P1a-v1 Dre-Mir-137-P1a-v2 Dre-Mir-137-P1b-v1 Dre-Mir-137-P1b-v2 Dsi-Mir-137 Dya-Mir-137 Ebu-Mir-137 Esc-Mir-137 Gga-Mir-137-P1-v1 Gga-Mir-137-P1-v2 Gja-Mir-137-P1-v1 Gja-Mir-137-P1-v2 Gmo-Mir-137-P1b-v1 Gmo-Mir-137-P1b-v2 Hme-Mir-137 Hsa-Mir-137-P1-v1 Hsa-Mir-137-P1-v2 Isc-Mir-137 Lan-Mir-137 Lch-Mir-137-P1 Lgi-Mir-137 Loc-Mir-137-P1-v1 Loc-Mir-137-P1-v2 Mal-Mir-137-P1b-v1 Mal-Mir-137-P1b-v2 Mdo-Mir-137-P1-v1 Mdo-Mir-137-P1-v2 Mml-Mir-137-P1-v1 Mml-Mir-137-P1-v2 Mmu-Mir-137-P1-v1 Mmu-Mir-137-P1-v2 Mun-Mir-137-P1 Oan-Mir-137-P1-v1 Oan-Mir-137-P1-v2 Obi-Mir-137 Ocu-Mir-137-P1-v1 Ocu-Mir-137-P1-v2 Pbv-Mir-137-P1-v1 Pbv-Mir-137-P1-v2 Pma-Mir-137-o1 Rno-Mir-137-P1-v1 Rno-Mir-137-P1-v2 Sha-Mir-137-P1-v1 Sha-Mir-137-P1-v2 Sko-Mir-137 Spt-Mir-137-P1 Spu-Mir-137 Sto-Mir-137-P1 Tgu-Mir-137-P1-v1 Tgu-Mir-137-P1-v2 Xbo-Mir-137 Xla-Mir-137-P1 Xtr-Mir-137-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(echTel2)

JH980298: 19784253-19784313 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CAGCAGCUUGGUCGUCUGACUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGAUUACGUUGUUAUUGCUUAAGAAUACGCGUAGUCGAGGAGAGUACCAGCGGCAGGCGGGCAGC

Get precursor sequence

Structure

        10          20        30        40        50        60
CAGCAGCUUGGUCGUCUG--|          UG   G           UG A    ACGGA 
                    ACUCUCUUCGG  ACG GUAUUCUUGGG  G UAAU     U
                    UGAGAGGAGCU  UGC CAUAAGAAUUC  U AUUG     U
CGACGGGCGGACGGCGACCA^          GA   G           GU -    UUGCA 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ete-Mir-137-P1-v2_5p* (predicted)

mirBase accession

None

Sequence

0- GACGGGUAUUCUUGGGUGGAUAAU -24

Get sequence

Mature sequence

Ete-Mir-137-P1-v2_3p

mirBase accession

None

Sequence

38- UAUUGCUUAAGAAUACGCGUAGU -61

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