MirGeneDB 3.0

MirGeneDB ID

Mgi-Mir-137

Family name

MIR-137 (all species)

Seed

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-137-P11 Aae-Mir-137-P12 Aca-Mir-137-P1-v1 Aca-Mir-137-P1-v2 Aca-Mir-137-P3-v1 Aca-Mir-137-P3-v2 Aga-Mir-137 Agr-Mir-137 Ami-Mir-137-P1-v1 Ami-Mir-137-P1-v2 Ami-Mir-137-P3-v1 Ami-Mir-137-P3-v2 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bge-Mir-137-P13-v1 Bge-Mir-137-P13-v2 Bge-Mir-137-P14-v1 Bge-Mir-137-P14-v2 Bko-Mir-137 Bla-Mir-137-P15a Bla-Mir-137-P15b Bla-Mir-137-P15c Bpl-Mir-137 Bta-Mir-137-P1-v1 Bta-Mir-137-P1-v2 Cbr-Mir-137 Cel-Mir-137 Cfa-Mir-137-P1-v1 Cfa-Mir-137-P1-v2 Cja-Mir-137-P1-v1 Cja-Mir-137-P1-v2 Cli-Mir-137-P1-v1 Cli-Mir-137-P1-v2 Cli-Mir-137-P3 Cmi-Mir-137-P1 Cpi-Mir-137-P1-v1 Cpi-Mir-137-P1-v2 Cpi-Mir-137-P3-v1 Cpi-Mir-137-P3-v2 Csc-Mir-137-P21 Csc-Mir-137-P22 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dno-Mir-137-P1-v1 Dno-Mir-137-P1-v2 Dpu-Mir-137 Dre-Mir-137-P1a-v1 Dre-Mir-137-P1a-v2 Dre-Mir-137-P1b-v1 Dre-Mir-137-P1b-v2 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Eca-Mir-137-P1 Efe-Mir-137-P4 Efe-Mir-137-P5 Efe-Mir-137-P6 Efe-Mir-137-P7 Efe-Mir-137-P8 Efe-Mir-137-P9 Efe-Mir-137-P10 Esc-Mir-137 Ete-Mir-137-P1-v1 Ete-Mir-137-P1-v2 Gga-Mir-137-P1-v1 Gga-Mir-137-P1-v2 Gga-Mir-137-P3-v1 Gga-Mir-137-P3-v2 Gja-Mir-137-P1-v1 Gja-Mir-137-P1-v2 Gja-Mir-137-P3 Gmo-Mir-137-P1b-v1 Gmo-Mir-137-P1b-v2 Gmo-Mir-137-P3a-v1 Gmo-Mir-137-P3a-v2 Gmo-Mir-137-P3b-v1 Gmo-Mir-137-P3b-v2 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Hsa-Mir-137-P1-v1 Hsa-Mir-137-P1-v2 Isc-Mir-137 Laf-Mir-137-P1 Lan-Mir-137 Lch-Mir-137-P1 Lch-Mir-137-P3 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Loc-Mir-137-P1-v1 Loc-Mir-137-P1-v2 Loc-Mir-137-P3-v1 Loc-Mir-137-P3-v2 Lpo-Mir-137-P16 Lpo-Mir-137-P17 Lpo-Mir-137-P18 Lpo-Mir-137-P19 Lpo-Mir-137-P20 Mal-Mir-137-P1b-v1 Mal-Mir-137-P1b-v2 Mal-Mir-137-P3a-v1 Mal-Mir-137-P3a-v2 Mal-Mir-137-P3b-v1 Mal-Mir-137-P3b-v2 Mdo-Mir-137-P1-v1 Mdo-Mir-137-P1-v2 Mdo-Mir-137-P3-v1 Mdo-Mir-137-P3-v2 Mml-Mir-137-P1-v1 Mml-Mir-137-P1-v2 Mmr-Mir-137-P1 Mmu-Mir-137-P1-v1 Mmu-Mir-137-P1-v2 Mom-Mir-137 Mun-Mir-137-P1 Mun-Mir-137-P3 Neu-Mir-137-P1 Neu-Mir-137-P3 Oan-Mir-137-P1-v1 Oan-Mir-137-P1-v2 Oan-Mir-137-P3-v1 Oan-Mir-137-P3-v2 Obi-Mir-137 Ocu-Mir-137-P1-v1 Ocu-Mir-137-P1-v2 Ofu-Mir-137 Ovu-Mir-137-v1 Ovu-Mir-137-v2 Pab-Mir-137-P1-v1 Pab-Mir-137-P1-v2 Pau-Mir-137 Pbv-Mir-137-P1-v1 Pbv-Mir-137-P1-v2 Pbv-Mir-137-P3-v1 Pbv-Mir-137-P3-v2 Pca-Mir-137 Pdu-Mir-137 Pfl-Mir-137-v1 Pfl-Mir-137-v2 Pma-Mir-137-o1 Pma-Mir-137-o2 Pma-Mir-137-o3 Pmi-Mir-137-v1 Pmi-Mir-137-v2 Pve-Mir-137 Rno-Mir-137-P1-v1 Rno-Mir-137-P1-v2 Rph-Mir-137 Sha-Mir-137-P1-v1 Sha-Mir-137-P1-v2 Sha-Mir-137-P3 Sko-Mir-137 Snu-Mir-137 Spt-Mir-137-P1 Spu-Mir-137 Sto-Mir-137-P1 Tca-Mir-137-v1 Tca-Mir-137-v2 Tgu-Mir-137-P1-v1 Tgu-Mir-137-P1-v2 Tni-Mir-137-P3b Tur-Mir-137 War-Mir-137 Xbo-Mir-137 Xla-Mir-137-P1 Xtr-Mir-137-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold72: 265491-265544 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGUCCAGCCACCCAGAGCCGAGCUACUGGCGAGUAUUCUUGGGUAAAUAUCACUUUAAAGCUGUUAUUGCUUGAGAAUACACGUAAAUAUUUCGGCAAGACCAGCUUUGACAGU

Get precursor sequence

Structure

        10          20        30        40        50       
AGUCCAGCCACCCAGAG--|    C  CUG   A       UG     A  U  CUUU 
                   CCGAG UA   GCG GUAUUCU  GGUAA UA CA    \
                   GGCUU AU   UGC CAUAAGA  UCGUU AU GU    A
UGACAGUUUCGACCAGAAC^    U  AAA   A       GU     -  U  CGAA 
  110       100        90        80        70         60

Deep sequencing

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Comment

The Drosha cut appears to be moved +2 relative to the other lophotrochozoans.

3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-137_5p*

mirBase accession

None

Sequence

0- GAGUAUUCUUGGGUAAAUAUCA -22

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Mature sequence

Mgi-Mir-137_3p

mirBase accession

None

Sequence

33- UUAUUGCUUGAGAAUACACGU -54

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