Mir-137-P3-v1

MirGeneDB ID

Loc-Mir-137-P3-v1

Family name

MIR-137 (all species)

Seed

UAUUGCU

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-137-P1-v1 Loc-Mir-137-P1-v2 Loc-Mir-137-P3-v2

Orthologues

Aca-Mir-137-P3-v1 Aca-Mir-137-P3-v2 Aga-Mir-137 Agr-Mir-137 Ami-Mir-137-P3-v1 Ami-Mir-137-P3-v2 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bko-Mir-137 Bpl-Mir-137 Cbr-Mir-137 Cel-Mir-137 Cli-Mir-137-P3 Cpi-Mir-137-P3-v1 Cpi-Mir-137-P3-v2 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dpu-Mir-137 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Esc-Mir-137 Gga-Mir-137-P3-v1 Gga-Mir-137-P3-v2 Gja-Mir-137-P3 Gmo-Mir-137-P3a-v1 Gmo-Mir-137-P3a-v2 Gmo-Mir-137-P3b-v1 Gmo-Mir-137-P3b-v2 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Isc-Mir-137 Lan-Mir-137 Lch-Mir-137-P3 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Mal-Mir-137-P3a-v1 Mal-Mir-137-P3a-v2 Mal-Mir-137-P3b-v1 Mal-Mir-137-P3b-v2 Mdo-Mir-137-P3-v1 Mdo-Mir-137-P3-v2 Mgi-Mir-137 Mom-Mir-137 Mun-Mir-137-P3 Neu-Mir-137-P3 Oan-Mir-137-P3-v1 Oan-Mir-137-P3-v2 Obi-Mir-137 Ofu-Mir-137 Pau-Mir-137 Pbv-Mir-137-P3-v1 Pbv-Mir-137-P3-v2 Pca-Mir-137 Pdu-Mir-137 Pma-Mir-137-o3 Pve-Mir-137 Rph-Mir-137 Sha-Mir-137-P3 Sko-Mir-137 Snu-Mir-137 Spu-Mir-137 Tni-Mir-137-P3b Tur-Mir-137 War-Mir-137 Xbo-Mir-137

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG6: 16741016-16741074 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGGCUACGCCACCUGCUCCGUCUCAGCCACGGGUAUUCUUGGGUAGAUAAUACGGAUGUCGUUGUUAUUGCUUGAGAAUACGCGUAGCUGGGUGGAGUCCCUGCGACAAGCCCCACC

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Structure

        10           20        30        40        50         
GGAGGCUACGCCACCUG---|    U      C   G       UG     A    ACGGA 
                    CUCCG CUCAGC ACG GUAUUCU  GGUAG UAAU     U
                    GAGGU GGGUCG UGC CAUAAGA  UCGUU AUUG     G
CCACCCCGAACAGCGUCCCU^    -      A   G       GU     -    UUGCU 
       110       100         90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-137-P3-v1_5p*

mirBase accession

None

Sequence

0- ACGGGUAUUCUUGGGUAGAUAAU -23

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Mature sequence

Loc-Mir-137-P3-v1_3p

mirBase accession

None

Sequence

36- UUAUUGCUUGAGAAUACGCGUAG -59

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