Mir-137-P3a-v2

MirGeneDB ID

Gmo-Mir-137-P3a-v2

Family name

MIR-137 (all species)

Seed

AUUGCUU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-137-2

Paralogues

Gmo-Mir-137-P1b-v1 Gmo-Mir-137-P1b-v2 Gmo-Mir-137-P3a-v1 Gmo-Mir-137-P3b-v1 Gmo-Mir-137-P3b-v2

Orthologues

Aca-Mir-137-P3-v1 Aca-Mir-137-P3-v2 Aga-Mir-137 Agr-Mir-137 Ami-Mir-137-P3-v1 Ami-Mir-137-P3-v2 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bko-Mir-137 Bpl-Mir-137 Cbr-Mir-137 Cel-Mir-137 Cli-Mir-137-P3 Cpi-Mir-137-P3-v1 Cpi-Mir-137-P3-v2 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dpu-Mir-137 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Esc-Mir-137 Gga-Mir-137-P3-v1 Gga-Mir-137-P3-v2 Gja-Mir-137-P3 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Isc-Mir-137 Lan-Mir-137 Lch-Mir-137-P3 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Loc-Mir-137-P3-v1 Loc-Mir-137-P3-v2 Mal-Mir-137-P3a-v1 Mal-Mir-137-P3a-v2 Mdo-Mir-137-P3-v1 Mdo-Mir-137-P3-v2 Mgi-Mir-137 Mom-Mir-137 Mun-Mir-137-P3 Neu-Mir-137-P3 Oan-Mir-137-P3-v1 Oan-Mir-137-P3-v2 Obi-Mir-137 Ofu-Mir-137 Pau-Mir-137 Pbv-Mir-137-P3-v1 Pbv-Mir-137-P3-v2 Pca-Mir-137 Pdu-Mir-137 Pma-Mir-137-o3 Pve-Mir-137 Rph-Mir-137 Sha-Mir-137-P3 Sko-Mir-137 Snu-Mir-137 Spu-Mir-137 Tur-Mir-137 War-Mir-137 Xbo-Mir-137

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1590: 3340-3400 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-137-P3a-v2)

Mir-137-P3a-v2 GeneScaffold_1590: 3340-3400 [+] UCSC Ensembl
Mir-137-P3a-v1 GeneScaffold_1590: 3341-3399 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGAGGAAUGUCUGAGUGCUCCGUCUCGGCCACGGGUAUUCUUGGGUUGAUAAUACAGAUGUUGAUGUUAUUGCUUGAGAAUACGCGUAGCUGAGGGGAAGCCAUGGCCGACGGACAGAGA

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Structure

        10           20        30        40        50        60
GGGAGGAAUGUCUGAGU--  -|  G       C   G       UG   U      ACAGA 
                   GC UCC UCUCGGC ACG GUAUUCU  GGU GAUAAU     U
                   CG AGG GGAGUCG UGC CAUAAGA  UCG UUAUUG     G
AGAGACAGGCAGCCGGUAC  A^  -       A   G       GU   -      UAGUU 
 .       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-137-P3a-v2_5p*

mirBase accession

MIMAT0044126

Sequence

0- CACGGGUAUUCUUGGGUUGAUAAU -24

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Mature sequence

Gmo-Mir-137-P3a-v2_3p

mirBase accession

MIMAT0044058

Sequence

38- UAUUGCUUGAGAAUACGCGUAGC -61

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