Mir-137-v1

MirGeneDB ID

Pmi-Mir-137-v1

Family name

MIR-137 (all species)

Seed

AUUGCUU

Species

Bat starfish (Patiria miniata)

MiRBase ID

pmi-mir-137

Paralogues

Pmi-Mir-137-v2

Orthologues

Aga-Mir-137 Agr-Mir-137 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bko-Mir-137 Bpl-Mir-137 Cbr-Mir-137 Cel-Mir-137 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dpu-Mir-137 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Esc-Mir-137 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Isc-Mir-137 Lan-Mir-137 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Mgi-Mir-137 Mom-Mir-137 Obi-Mir-137 Ofu-Mir-137 Ovu-Mir-137-v1 Pau-Mir-137 Pca-Mir-137 Pdu-Mir-137 Pfl-Mir-137-v1 Pve-Mir-137 Rph-Mir-137 Sko-Mir-137 Snu-Mir-137 Spu-Mir-137 Tca-Mir-137-v1 Tur-Mir-137 War-Mir-137 Xbo-Mir-137

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Pmin1)

JH769235.1: 38217-38276 [+]

Clustered miRNAs
(< 50kb from Mir-137-v1)

Mir-137-v1 JH769235.1: 38217-38276 [+]
Mir-137-v2 JH769235.1: 38217-38276 [+]

Precursor
(pre-Mir +30nt flank)

UGGCCGGGACCCACUACAGAUCCCUUGAUUACGGGUAUUCUCGGGUUAAUAAUACAGUUAAUUGAUGUUAUUGCUUGAGAAUACACGUAGUGACGGGUUCCCACGUCGACAGCGGCUCUC

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Structure

        10          20        30        40        50          
UGGCCGGGACCCACUACA--| U   UUG      G            U      ACAGUU 
                    GA CCC   AUUACG GUAUUCUCGGGU AAUAAU      \
                    CU GGG   UGAUGC CAUAAGAGUUCG UUAUUG      A
CUCUCGGCGACAGCUGCACC^ U   CAG      A            -      UAGUUA 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	To

Star sequence

Pmi-Mir-137-v1_5p*

mirBase accession

None

Sequence

0- ACGGGUAUUCUCGGGUUAAUAAU -23

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Mature sequence

Pmi-Mir-137-v1_3p

mirBase accession

MIMAT0032160

Sequence

38- UAUUGCUUGAGAAUACACGUAG -60

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