Mir-137-P1-v1

MirGeneDB ID

Cpi-Mir-137-P1-v1

Family name

MIR-137 (all species)

Seed

UAUUGCU

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-137a

Paralogues

Cpi-Mir-137-P1-v2 Cpi-Mir-137-P3-v1 Cpi-Mir-137-P3-v2

Orthologues

Aca-Mir-137-P1-v1 Aca-Mir-137-P1-v2 Aga-Mir-137 Agr-Mir-137 Ami-Mir-137-P1-v1 Ami-Mir-137-P1-v2 Asu-Mir-137 Ava-Mir-137 Bfl-Mir-137 Bko-Mir-137 Bpl-Mir-137 Bta-Mir-137-P1-v1 Bta-Mir-137-P1-v2 Cbr-Mir-137 Cel-Mir-137 Cfa-Mir-137-P1-v1 Cfa-Mir-137-P1-v2 Cja-Mir-137-P1-v1 Cja-Mir-137-P1-v2 Cli-Mir-137-P1-v1 Cli-Mir-137-P1-v2 Cmi-Mir-137-P1 Cte-Mir-137 Dan-Mir-137 Dgr-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dno-Mir-137-P1-v1 Dno-Mir-137-P1-v2 Dpu-Mir-137 Dre-Mir-137-P1a-v1 Dre-Mir-137-P1a-v2 Dre-Mir-137-P1b-v1 Dre-Mir-137-P1b-v2 Dsi-Mir-137 Dya-Mir-137 Eba-Mir-137 Ebu-Mir-137 Eca-Mir-137-P1 Esc-Mir-137 Ete-Mir-137-P1-v1 Ete-Mir-137-P1-v2 Gga-Mir-137-P1-v1 Gga-Mir-137-P1-v2 Gja-Mir-137-P1-v1 Gja-Mir-137-P1-v2 Gmo-Mir-137-P1b-v1 Gmo-Mir-137-P1b-v2 Gpa-Mir-137 Hme-Mir-137 Hru-Mir-137 Hsa-Mir-137-P1-v1 Hsa-Mir-137-P1-v2 Isc-Mir-137 Laf-Mir-137-P1 Lan-Mir-137 Lch-Mir-137-P1 Lgi-Mir-137 Lhy-Mir-137 Llo-Mir-137 Loc-Mir-137-P1-v1 Loc-Mir-137-P1-v2 Mal-Mir-137-P1b-v1 Mal-Mir-137-P1b-v2 Mdo-Mir-137-P1-v1 Mdo-Mir-137-P1-v2 Mgi-Mir-137 Mml-Mir-137-P1-v1 Mml-Mir-137-P1-v2 Mmr-Mir-137-P1 Mmu-Mir-137-P1-v1 Mmu-Mir-137-P1-v2 Mom-Mir-137 Mun-Mir-137-P1 Neu-Mir-137-P1 Oan-Mir-137-P1-v1 Oan-Mir-137-P1-v2 Obi-Mir-137 Ocu-Mir-137-P1-v1 Ocu-Mir-137-P1-v2 Ofu-Mir-137 Pab-Mir-137-P1-v1 Pab-Mir-137-P1-v2 Pau-Mir-137 Pbv-Mir-137-P1-v1 Pbv-Mir-137-P1-v2 Pca-Mir-137 Pdu-Mir-137 Pma-Mir-137-o1 Pve-Mir-137 Rno-Mir-137-P1-v1 Rno-Mir-137-P1-v2 Rph-Mir-137 Sha-Mir-137-P1-v1 Sha-Mir-137-P1-v2 Sko-Mir-137 Snu-Mir-137 Spt-Mir-137-P1 Spu-Mir-137 Sto-Mir-137-P1 Tgu-Mir-137-P1-v1 Tgu-Mir-137-P1-v2 Tur-Mir-137 War-Mir-137 Xbo-Mir-137 Xla-Mir-137-P1 Xtr-Mir-137-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584718: 5802475-5802533 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-137-P1-v1)

Mir-137-P1-v2 JH584718: 5802474-5802534 [+] UCSC Ensembl
Mir-137-P1-v1 JH584718: 5802475-5802533 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUCAGCAGAUUUCUGACUCUCUUCGGUGACGGGUAUUCUUGGGUGGAUAAUACGGAUUACGUUGUUAUUGCUUAAGAAUACGCGUAGUCGAGGAGAGUACCCGCGGCAGGCAGGCAG

Get precursor sequence

Structure

        10          20        30        40        50         
GCCUCAGCAGAUUUCUG--|          UG   G           UG A     CGGA 
                   ACUCUCUUCGG  ACG GUAUUCUUGGG  G UAAUA    U
                   UGAGAGGAGCU  UGC CAUAAGAAUUC  U AUUGU    U
GACGGACGGACGGCGCCCA^          GA   G           GU -     UGCA 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Te	Te	Te	To

Star sequence

Cpi-Mir-137-P1-v1_5p*

mirBase accession

None

Sequence

0- ACGGGUAUUCUUGGGUGGAUAAUA -24

Get sequence

Mature sequence

Cpi-Mir-137-P1-v1_3p

mirBase accession

MIMAT0037758

Sequence

36- UUAUUGCUUAAGAAUACGCGUAG -59

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