MirGeneDB ID | Ete-Mir-224 |
Family name |
MIR-224 (all species) |
Seed |
AAGUCAC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-224
Cfa-Mir-224
Cpo-Mir-224
Hsa-Mir-224
Mml-Mir-224
Mmu-Mir-224
Ocu-Mir-224
Rno-Mir-224
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980398: 3995184-3995252 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCAGCAGAGGAGACAAGGCCCAGGGGCUUUCAAGUCACUAGUGGUUCCGUUUAGUAGAUGGUUGUGCAUUGUUUCAAAAUGGUGCCCUAGUGACUACAAAGCCCCAGAGCCGGCAUCAUCCCCCAAGCC
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|
Structure | 10 20 30 40 50 60
GCAGCAGAGGAGACAAG--| CCA CA U U AGUAGAUGGUU
GC GGGGCUUU AGUCACUAG GGU CCGUUU G
CG CCCCGAAA UCAGUGAUC CCG GGUAAA U
CCGAACCCCCUACUACGGC^ AGA CA - U ACUUUGUUACG
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-224_5p |
mirBase accession | None |
Sequence |
0- CAAGUCACUAGUGGUUCCGUUUAG -24
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|
Star sequence |
Ete-Mir-224_3p* (predicted) |
mirBase accession | None |
Sequence |
46- AAAUGGUGCCCUAGUGACUACAA -69
Get sequence
|