MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-224

Family name MIR-224 (all species)
Seed AAGUCAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-224
Paralogues
Orthologues Bta-Mir-224  Cfa-Mir-224  Cpo-Mir-224  Ete-Mir-224  Hsa-Mir-224  Mml-Mir-224  Mmu-Mir-224  Rno-Mir-224 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0033: 727743-727810 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-224)
Mir-452-v1 chrUn0033: 726712-726772 [+] UCSC Ensembl
Mir-452-v2 chrUn0033: 726715-726771 [+] UCSC Ensembl
Mir-224 chrUn0033: 727743-727810 [+] UCSC Ensembl
Mir-12093 chrUn0033: 727960-728017 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGCAGACGAGACAAGGCCUAGGGGCUUUCAAGUCACUAGUGGUUCCGUUUAGUAGAUGGUUUACAUUUCUUCAAAAUGGUGCCCUAGUGACUACAAAGCCCCAGAGCCAGCAUCAUCACGGAAGCA
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Structure
        10           20        30        40        50        60    
GUGGCAGACGAGACAAG--  -| A        CA         U   U      AGUAGAUGGUU 
                   GC CU GGGGCUUU  AGUCACUAG GGU CCGUUU           \
                   CG GA CCCCGAAA  UCAGUGAUC CCG GGUAAA           U
ACGAAGGCACUACUACGAC  A^ -        CA         -   U      ACUUCUUUACA 
      120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-224_5p

mirBase accessionMIMAT0048360
Sequence
0- CAAGUCACUAGUGGUUCCGUUUAG -24
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Star sequence

Ocu-Mir-224_3p*

mirBase accessionMIMAT0048361
Sequence
45- AAAUGGUGCCCUAGUGACUACAA -68
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