MirGeneDB ID | Ete-Mir-2355 |
Family name |
MIR-2355 (all species) |
Seed |
UCGUGAG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-2355
Cfa-Mir-2355
Cja-Mir-2355
Cpo-Mir-2355
Dno-Mir-2355
Hsa-Mir-2355
Laf-Mir-2355
Mml-Mir-2355
Mmr-Mir-2355
Ocu-Mir-2355
Pab-Mir-2355
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980302: 33329502-33329568 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UGCAUGGAAAAUAACAUUGUCAGCCGUGUCAUCGUGAGAGACAAUGGACAAUAUGCUAUGAUAAUUGUAUGGCAUUGUCCUUGGUGUUUGGCGAUAGUAUUGCUGACGUUAUCCCUCUCGUACAUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCAUGGAAAAUAACAU--| C UC G G AAU AUGCUAUGAU
UGUCAGC GUG AUCGU AGA AC GGACAAU \
GCAGUCG UAU UAGCG UUU UG CCUGUUA A
UGUACAUGCUCUCCCUAUU^ U GA G G GUU CGGUAUGUUA
120 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-2355_5p (predicted) |
mirBase accession | None |
Sequence |
0- AUCGUGAGAGACAAUGGACAAU -22
Get sequence
|
Star sequence |
Ete-Mir-2355_3p* (predicted) |
mirBase accession | None |
Sequence |
45- UGUCCUUGGUGUUUGGCGAUAG -67
Get sequence
|