| MirGeneDB ID | Gmo-Mir-148-P2 |
|---|
| Family name |
MIR-148 (all species) |
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| Seed |
CAGUGCA |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-148
|
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| Paralogues |
Gmo-Mir-148-P3
|
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| Orthologues |
Cmi-Mir-148-P2
Dre-Mir-148-P2
Ebu-Mir-148
Loc-Mir-148-P2
Mal-Mir-148-P2
Pma-Mir-148-o2
Tni-Mir-148-P2
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1009: 245024-245081 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGUGAGGUGGCACUGUGGCUCCCCAAAUAAAGUUCUGUGAUACACUCAGACUGUAAUUGACGGUAGUCAGUGCAUUACAGAACUUUGUUUUGGGAGUAAAGUACUAACCGGGAACCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGUGAGGUGGCACUGUG--| C A CA GUAAU
GCUCCC AAAUAAAGUUCUGUGAU CACU GACU U
UGAGGG UUUGUUUCAAGACAUUA GUGA CUGA G
GCCAAGGGCCAAUCAUGAAA^ U C -- UGGCA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The highest read count is monoadenylated at the 3' end of the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-148-P2_5p* |
| mirBase accession | MIMAT0044086 |
|---|
| Sequence |
0- AAGUUCUGUGAUACACUCAGACU -23
Get sequence
|
|---|
| Mature sequence |
Gmo-Mir-148-P2_3p |
| mirBase accession | MIMAT0044087 |
|---|
| Sequence |
37- UCAGUGCAUUACAGAACUUUG -58
Get sequence
|
|---|
