MirGeneDB ID | Gmo-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-152
|
Paralogues |
Gmo-Mir-148-P2
|
Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Eca-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Neu-Mir-148-P3
Oan-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
contig24317: 803-861 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUUGUUGUGAAGUUGUGAGUACCUGGUCCAAGUUCUGUGAUACACUCGGACUGUGAAUCUAUGCUAGUCAGUGCAUAACAGAACUUUGGCCCGCUGGCUCCUGGACAGCACAGAGUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUUGUUGUGAAGUUGU- ACCU-| C G A CG GUGAAU
GAGU GGUC AAGUUCUGU AU CACU GACU \
CUCG CCGG UUCAAGACA UA GUGA CUGA C
GCUGAGACACGACAGGUC GUCGC^ U A C -- UCGUAU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The highest read count is monoadenylated at the 3' end of the 3p arm. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Gmo-Mir-148-P3_5p* |
mirBase accession | MIMAT0044018 |
Sequence |
0- AAGUUCUGUGAUACACUCGGACU -23
Get sequence
|
Mature sequence |
Gmo-Mir-148-P3_3p |
mirBase accession | MIMAT0044019 |
Sequence |
38- UCAGUGCAUAACAGAACUUUG -59
Get sequence
|