MirGeneDB ID | Cpo-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-152
|
Paralogues |
Cpo-Mir-148-P1
Cpo-Mir-148-P4
|
Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Eca-Mir-148-P3
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Neu-Mir-148-P3
Oan-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (cavPor3) |
scaffold_53: 9067371-9067431 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCGAGGAGGCGGGCGCCUGUCCCCCCAGCCCAGGUUCUGUGAUACACUCAGACUCGGACUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCCAGGAGGACGUUCCUCACCCGCGGGCCUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGAGGAGGCGGGCGCCU--| C CA G A CA CGGACU
GUCC CC GCCCAGGUUCUGU AU CACU GACU \
CAGG GG CGGGUUCAAGACA UA GUGA CUGA C
GUCCGGGCGCCCACUCCUUG^ A AC G C -- CGAGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Star sequence |
Cpo-Mir-148-P3_5p* |
mirBase accession | MIMAT0047032 |
Sequence |
0- CAGGUUCUGUGAUACACUCAGACU -24
Get sequence
|
Mature sequence |
Cpo-Mir-148-P3_3p |
mirBase accession | MIMAT0047033 |
Sequence |
39- UCAGUGCAUGACAGAACUUGGG -61
Get sequence
|