MirGeneDB ID | Neu-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
GGUUCUG |
Species |
Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID |
|
Paralogues |
Neu-Mir-148-P4
|
Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Eca-Mir-148-P3
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Oan-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051814.1: 353154851-353154909 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAAAGGACCUCCGCGAGUCUCCCCAGCCCAGGUUCUGUGAUACACUCCGACUUAGACUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGUUUGGGUGGACCUUCUGCACGGAAAGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAAAGGACCUCCGCGA- UC -| G A CC UAGACU
GUC CCC AGCCCAGGUUCUGU AU CACU GACU \
CAG GGG UUGGGUUCAAGACA UA GUGA CUGA C
GGGGAAAGGCACGUCUUC GU U^ G C -- CGAGGU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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Mature sequence |
Neu-Mir-148-P3_5p |
mirBase accession | None |
Sequence |
0- AGGUUCUGUGAUACACUCCGACU -23
Get sequence
|
Co-mature sequence |
Neu-Mir-148-P3_3p |
mirBase accession | None |
Sequence |
38- UCAGUGCAUGACAGAACUUGG -59
Get sequence
|