MirGeneDB ID | Dre-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-152
|
Paralogues |
Dre-Mir-148-P2
|
Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Ebu-Mir-148
Eca-Mir-148-P3
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Neu-Mir-148-P3
Oan-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (danRer11) |
chr3: 24095972-24096030 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUGAUGGUUUUCUCCUGUUCACCUGGCUCAAGUUCUGUGAUACACUCAGACUUUGAAUCAGUGGUAGUCAGUGCAUGACAGAACUUUGGCCCGGACGGACCCAAAGCGAGAGCCAACA
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUGAUGGUUUUCUCCU- A-| U C G A CA UUGAAU
GUUC CC GGCU AAGUUCUGU AU CACU GACU \
CAGG GG CCGG UUCAAGACA UA GUGA CUGA C
ACAACCGAGAGCGAAACC CA^ C U G C -- UGGUGA
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The highest read count is monoadenylated at the 3' end of the 3p arm. |
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-148-P3_5p* |
mirBase accession | None |
Sequence |
0- AAGUUCUGUGAUACACUCAGACU -23
Get sequence
|
Mature sequence |
Dre-Mir-148-P3_3p |
mirBase accession | MIMAT0001847 |
Sequence |
38- UCAGUGCAUGACAGAACUUUG -59
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-152
|